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Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud

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dc.creator Di Tommaso, Paolo
dc.creator Orobitg Cortada, Miquel
dc.creator Guirado Fernández, Fernando
dc.creator Cores Prado, Fernando
dc.creator Espinosa, Toni
dc.creator Notredame, Cedric
dc.date 2010
dc.date.accessioned 2025-11-03T12:17:21Z
dc.date.available 2025-11-03T12:17:21Z
dc.identifier https://doi.org/10.1093/bioinformatics/btq304
dc.identifier 1367-4803
dc.identifier http://hdl.handle.net/10459.1/56659
dc.identifier.uri http://fima-docencia.ub.edu:8080/xmlui/handle/123456789/24409
dc.description Summary: We present the first parallel implementation of the T-Coffee consistency-based multiple aligner. We benchmark it on the Amazon Elastic Cloud (EC2) and show that the parallelization procedure is reasonably effective. We also conclude that for a web server with moderate usage (10K hits/month) the cloud provides a cost-effective alternative to in-house deployment.
dc.description Centro de Regulación Genómica (CRG to C.N., P.T., C.K.); Plan Nacional (BFU2008-00419); Lleida University, the Spanish ministry of education (TIN2008-05913 to M.O., F.G., F.C.); the Consolider Project (CSD 2007-00050); Super-computacion y e-Cienia (SYEC).
dc.language eng
dc.publisher Oxford University Press
dc.relation Reproducció del document publicat a https://doi.org/10.1093/bioinformatics/btq304
dc.relation Bioinformatics, 2010, vol. 26, núm. 15, p. 1903-1904
dc.rights cc-by-nc, (c) Di Tomasso et al., 2010
dc.rights info:eu-repo/semantics/openAccess
dc.rights http://creativecommons.org/licenses/by-nc-nd/3.0/es/
dc.title Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud
dc.type article
dc.type publishedVersion


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